bash
Mentors and Regional Facilitators
| Name | Region | Skills | Interests |
|---|---|---|---|
| Adam Carlson | Campus Champions | ||
| Aaron Jezghani | Campus Champions | ||
| Andrew Monaghan | ACCESS CSSN | ||
| Alexander Pacheco | |||
| Alyssa Pivirotto | ACCESS CSSN, Campus Champions | ||
| Anita Schwartz | Campus Champions | ||
| Al Tucker | Campus Champions | ||
| Bill Conn | Campus Champions, Great Plains | ||
| Michael Blackmon | Campus Champions, ACCESS CSSN | ||
| Brandon Biggs | OnDemand | ||
| Brian Haymore | Campus Champions, RMACC, CCMNet | ||
| Kevin Bryan | Campus Champions | ||
| Benjamin Meyers | Campus Champions | ||
| Christina Divoll | Campus Champions, ACCESS CSSN | ||
| Craig Gross | Campus Champions, CCMNet | ||
| Charles Forsyth | Campus Champions | ||
| Christopher Bl… | Campus Champions | ||
| Christina Koch | ACCESS CSSN | ||
| Cody Stevens | Campus Champions, CCMNet | ||
| Cesar Sul | ACCESS CSSN, Campus Champions | ||
| Dan Voss | Campus Champions, CCMNet | ||
| Bala Desinghu | ACCESS CSSN, Campus Champions, CAREERS, Northeast | ||
| Daniel Benedict | CCMNet | ||
| David Carlson | ACCESS CSSN, OnDemand | ||
| Daniel Morales | Campus Champions | ||
| Deborah Penchoff | Campus Champions | ||
| Daniel Howard | ACCESS CSSN, Campus Champions, CCMNet, RMACC | ||
| David Liu | CCMNet | ||
| Derek Strong | Campus Champions | ||
| Edwin Posada | Campus Champions | ||
| Eden Furtak-Cole | Campus Champions | ||
| Evan Linde | Campus Champions | ||
| Fernando Garzon | ACCESS CSSN | ||
| Feseha Abebe-Akele | CCMNet | ||
| Gaurav Khanna | Campus Champions, CAREERS, Northeast, CCMNet | ||
| Gil Speyer | ACCESS CSSN, RMACC, Campus Champions | ||
| Iman Rahbari | Campus Champions, ACCESS CSSN, CCMNet | ||
| Yu-Chieh Chi | Campus Champions | ||
| James Deaton | ACCESS CSSN, Campus Champions, Great Plains | ||
| Jeho Park | CCMNet, Campus Champions | ||
| Jeff Falgout | Campus Champions, RMACC | ||
| Jacob Fosso Tande | ACCESS CSSN, Campus Champions, CCMNet | ||
| Juan Jose Garc… | ACCESS CSSN | ||
| Juanjo Garcia Mesa | Campus Champions, CCMNet, ACCESS CSSN | ||
| Jack Garmer | Campus Champions | ||
| Jordan Hayes | Campus Champions | ||
| Jonathan Lyon | At-Large, Campus Champions, Kentucky, ACCESS CSSN | ||
| Jacob Pessin | Northeast | ||
| Juan Vanegas | Northeast | ||
| Jason Wells | ACCESS CSSN, Campus Champions | ||
| Jason Yalim | Campus Champions | ||
| Kali McLennan | Campus Champions, Great Plains | ||
| Keri Toksu | Northeast, Campus Champions | ||
| Katherine Nelson | Campus Champions, CAREERS, ACCESS CSSN | ||
| Od Odbadrakh | ACCESS CSSN | ||
| Kenneth Bundy | CAREERS | ||
| Kyle Hutson | Campus Champions | ||
| Lonnie Crosby | Campus Champions, ACCESS CSSN | ||
| Mohsen Ahmadkhani | CCMNet, ACCESS CSSN | ||
| Marcus Bond | Great Plains, Campus Champions, CCMNet | ||
| Martin Cuma | RMACC, Campus Champions | ||
| James Hutcheson | Campus Champions, ACCESS CSSN | ||
| Michael Kyle | Campus Champions | ||
| Mattie Niznik | Campus Champions | ||
| Andrew Monaghan | RMACC, Campus Champions | ||
| Michael Puerrer | Campus Champions, Northeast | ||
| Michael Schnaitter | ACCESS CSSN | ||
| Maryam Taeb | |||
| Nandan Tandon | CCMNet, Campus Champions | ||
| Nick Dusek | Campus Champions | ||
| Neil McGlohon | CAREERS | ||
| Nannan Shan | CCMNet, ACCESS CSSN | ||
| Jeffrey J. Nuc… | CAREERS, CCMNet | ||
| Justin Oelgoetz | Campus Champions, CCMNet | ||
| Nicholas Panchy | Campus Champions | ||
| Lev Gorenstein | CCMNet | ||
| Paul Rulis | Campus Champions | ||
| Rebecca Belshe | Campus Champions, CCMNet | ||
| David Reddy | Campus Champions | ||
| Mike Renfro | Campus Champions, CCMNet | ||
| Amy Roberts | Campus Champions | ||
| Ron Rahaman | Campus Champions | ||
| Ruben Lara | Campus Champions | ||
| Grant Scott | Great Plains | ||
| Xiaoqin Huang | ACCESS CSSN | ||
| Shaohao Chen | Northeast | ||
| Swabir Silayi | ACCESS CSSN, CCMNet, Campus Champions | ||
| Simon Delattre | |||
| Soham Pal | ACCESS CSSN, Campus Champions, CCMNet | ||
| Sebastian Sensale | Campus Champions | ||
| Shawn Sivy | Campus Champions, CAREERS | ||
| Sathish Srinivasan | ACCESS CSSN | ||
| Scott Valcourt | Northeast, Campus Champions | ||
| Mohammad Al-Tahat | CAREERS, Campus Champions, CCMNet | ||
| Tyler Burkett | Kentucky | ||
| Timothy Middelkoop | ACCESS CSSN, Campus Champions, CCMNet, Great Plains | ||
| Thomas Pranzatelli | |||
| Travis Ravert | CCMNet | ||
| Xiaoge Wang | Campus Champions | ||
| Wirawan Purwanto | Campus Champions, Northeast, ACCESS CSSN | ||
| William Lai | ACCESS CSSN |
Affinity Groups
There are no Affinity Groups associated with this topic. View All Affinity Groups.
Announcements
| Title | Date |
|---|---|
| CI Pathways: Leading the Way to Effective CI Use | 02/20/25 |
Upcoming Events & Trainings
| Title | Date |
|---|---|
| COMPLECS: Code Migration | 6/12/25 |
| COMPLECS: Code Migration | 6/12/25 |
| COMPLECS: Code Migration | 6/12/25 |
Topics from Ask.CI
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Knowledge Base Resources
| Title | Category | Tags | Skill Level |
|---|---|---|---|
| ACES: Charliecloud Containers for Scientific Workflows (Tutorial) | Learning | ACES, TAMU, scratch, lammps, tensorflow, open-ondemand, gpu, nfs, slurm, bash, training, python, containers | Beginner |
| AHPCC documentary | Docs | login, batch-jobs, slurm, bash, ssh, python, mpi | Beginner, Intermediate |
| AI/ML TechLab - Accelerating AI/ML Workflows on a Composable Cyberinfrastructure | Docs | ACES, documentation, TAMU, ai, visualization, deep-learning, machine-learning, neural-networks, login, authentication, composable-systems, gpu, nvidia, slurm, bash, modules, vim, anaconda, conda, programming, python, scikit-learn | Intermediate |
Engagements
Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
- Summary and objectives of the proposed experiments:
- An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
- Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
- Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
- Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress
People with Expertise
Katherine Nelson
Yale University
Programs
Campus Champions, CAREERS, ACCESS CSSN
Roles
mentor, administrator, Masquerade, ExportPeople, research computing facilitator, steering committee, regional admin
Expertise
Expertise
Expertise
People with Interest
Interests
Benjamin Meyers
Rochester Institute of Technology
Programs
Campus Champions
Roles
research computing facilitator
Interests
Martin Cuma
University of Utah
Programs
RMACC, Campus Champions
Roles
mentor, research computing facilitator