administering-hpc
Mentors and Regional Facilitators
| Name | Region | Skills | Interests |
|---|---|---|---|
| Aaron Jezghani | Campus Champions | ||
| Al Tucker | Campus Champions | ||
| Michael Blackmon | Campus Champions, ACCESS CSSN | ||
| Brandon Biggs | OnDemand | ||
| Brian Haymore | Campus Champions, RMACC, CCMNet | ||
| Christina Divoll | Campus Champions, ACCESS CSSN | ||
| Charles Forsyth | Campus Champions | ||
| Chad Julius | Campus Champions, Great Plains | ||
| Cody Stevens | Campus Champions, CCMNet | ||
| Michael Conner | Campus Champions | ||
| Stephen Cousins | Campus Champions | ||
| Craig Earley | RMACC | ||
| Chris Reidy | Campus Champions, CCMNet | ||
| David Liu | CCMNet | ||
| Edwin Posada | Campus Champions | ||
| Jeff Falgout | Campus Champions, RMACC | ||
| Jacob Fosso Tande | ACCESS CSSN, Campus Champions, CCMNet | ||
| Jack Garmer | Campus Champions | ||
| Jordan Hayes | Campus Champions | ||
| Jonathan Komperda | Campus Champions | ||
| Jeffrey Weekley | Campus Champions | ||
| Jason Wells | ACCESS CSSN, Campus Champions | ||
| Jason Yalim | Campus Champions | ||
| James Hutcheson | Campus Champions, ACCESS CSSN | ||
| Michael Schnaitter | ACCESS CSSN | ||
| Nick Dusek | Campus Champions | ||
| Nil Mu | CCMNet | ||
| Nannan Shan | CCMNet, ACCESS CSSN | ||
| Paul Gluhosky | Campus Champions | ||
| Lev Gorenstein | CCMNet | ||
| Mike Renfro | Campus Champions, CCMNet | ||
| Ric Anderson | Campus Champions | ||
| Ruben Lara | Campus Champions | ||
| Sean Anderson | ACCESS CSSN, Campus Champions, CCMNet, OnDemand | ||
| Sumit Saluja | Campus Champions | ||
| Sathish Srinivasan | ACCESS CSSN | ||
| Torey Battelle | Campus Champions, CCMNet | ||
| Timothy Middelkoop | ACCESS CSSN, Campus Champions, CCMNet, Great Plains | ||
| Trey Breckenridge | Campus Champions | ||
| William Lai | ACCESS CSSN |
Organizations
Affinity Groups
| Logo | Name | Description | Tags | Join |
|---|---|---|---|---|
|
hpc.social | High Performance Computing and related fields, including Big Data, Research Computing, and related hardware and software optimized for these fields, including research software engineering and… | Login to join | |
|
Account and Access Management CI Facilitators | A group for CI and RCD professionals responsible for developing and maintaining the Account and Access Management solutions used at their institutions. Participants are invited to share and discuss… | Login to join |
Announcements
Upcoming Events & Trainings
Topics from Ask.CI
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Knowledge Base Resources
| Title | Category | Tags | Skill Level |
|---|---|---|---|
| Containerized Jupyter Notebooks for HPCs | Learning | cloud, cloud-computing, openstack, scratch, data-management, data-reproducibility, github, workflow, open-ondemand, administering-hpc, configuration-automation, hpc-getting-started, hpc-tools, deployment, scripting, conda, jupyterhub, programming-best-practices, python, mpi, containers, docker, singularity | Intermediate |
| High performance computing 101 | Website | administering-hpc | Beginner |
| Hour of Ci | Learning | arcgis, gis, administering-hpc | Beginner |
Engagements
Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
- Summary and objectives of the proposed experiments:
- An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
- Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
- Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
- Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress
People with Expertise
Jordan Hayes
University of California - Riverside
Programs
Campus Champions
Roles
research computing facilitator
Expertise
Expertise
Nannan Shan
Purdue University
Programs
CCMNet, ACCESS CSSN
Roles
mentor, researcher/educator, research computing facilitator, research software engineer, cssn, Affinity Group Leader, Consultant, CCMNet
Expertise
People with Interest
Rachael Auch
South Dakota State University
Programs
Great Plains, Campus Champions, CCMNet
Roles
mentor, research computing facilitator, regional admin, CCMNet
Interests
Jeff Falgout
United States Geological Survey
Programs
Campus Champions, RMACC
Roles
research computing facilitator, ci systems engineer
Interests
Dr. Nabeel Alzahrani
California State University-San Bernardino
Programs
Campus Champions, CCMNet
Roles
mentor, researcher/educator, research computing facilitator, research software engineer, ci systems engineer, CCMNet
