People

Filters

Juanjo Garcia Mesa

Arizona State University

Programs

Campus Champions, CCMNet, ACCESS CSSN

Skills

llm profiling parallelization bash git vim ACCESS-allocations jetstream software-carpentry c++python r batch-jobs job-array job-submission slurm bioinformatics

Rob Harbert

Stonehill College

Assistant Professor of Biology and Bioinformatics

Programs

Northeast

Skills

anaconda biology github big-data bioinformatics genomics gis r sas distributed-computing batch-jobs sftp ssh open-ondemand

Lindsey Hauff

Rutgers University

Programs

Skills

genomics r spss bioinformatics slurm python bash scheduling

Jordan Hayes

University of California-Riverside

Programs

Campus Champions

Skills

bash anaconda singularity modules gpfs slurm duo compiling conda jupyterhub mpi pip rstudio-server jekyll xml big-data data-management data-transfer file-formats aws cyverse training software-carpentry bioinformatics fastx gatk genomics smrt trinity gaussian gromacs amber charmm namd pytorch scikit-learn comsol atlas git github github-pages programming programming-best-practices cleanup version-control c pthreads c++fortran java python r sql xsede scheduling job-array pending-jobs pre-emption api batch-jobs checkpoint dmtcp docker kubernetes distributed-computing environment-modules parameter-sweeps cpu-bound scripting tmux screen terminal-emulation-and-window-management administering-hpc cluster-management cgroups prometheus cluster-support file-transfer globus x11 vpn ssh smb sftp samba rdp putty vnc federated-authentication cilogon hardware infiniband interconnect nvidia hpc-cluster-build gpu acls hpc-storage cifs nfs spectrum-scale networking dtn ethernet firewall sciencedmz tcp schedulers sge pbs encryption key-management software-installation easybuild spark unix-environment vim vm

Chris Hemme

University of Rhode Island

Bioinformatics Core Director

Programs

CAREERS

Skills

big-data bioinformatics r data-analysis anaconda genomics biology

Xiaoqin Huang

Rice University

Programs

ACCESS CSSN

Skills

ACCESS-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal anvil bridges-2 darwin delta documentation expanse rockfish stampede2 transfer-su xdmod tickets data-analysis deep-learning dft machine-learning neural-networks openstack globus github benchmarking checkpoint debugging memory optimization parallelization performance-tuning profiling scaling scripting amber bioinformatics charmm gamess gaussian gromacs lammps molecular-dynamics namd pytorch tensorflow biology computational-chemistry data-science genomics quantum-mechanics open-ondemand cgroups condo gpu nvidia batch-jobs schedulers job-array bash git pthreads ssh proposal-development research-facilitation research-grants community-outreach anaconda c c++compiling conda cuda fortran jupyterhub mpi openmp openmpi programming python containers dependencies easybuild docker interactive-mode pip singularity software-installation

Xiaoluo Jiao

Columbia University, Mailman School of Public Health

Programs

CAREERS

Skills

sas data-wrangling data-management data-reproducibility biology bioinformatics genomics machine-learning psychology git github programming cleanup r

Chimdia Kabuo

Indiana University-Purdue University Fort Wayne

Programs

ACCESS CSSN

Skills

masoud keramati

Northeastern University

Programs

ACCESS CSSN

Skills

Supriya Kumari Kushwaha

Northeastern University

Programs

Skills

ai generative-ai llm machine-learning supervised-learning unsupervised-learning data-analysis visualization python artificial-intelligence data-science data-management database

Audrey Law

Bluegrass Community and Technical College

Instructor, Biotechnology Coordinator

Programs

Kentucky

Skills

data-analysis bioinformatics genomics git github unix-environment

shuai liu

University of Arkansas

Programs

ACCESS CSSN

Skills

Lenore Martin

University of Rhoide Island

Tenured Associate Professor

Programs

CAREERS

Skills

Abdullah Al Maruf

Programs

CCMNet

Skills

Vinayak Mathur

Cabrini University

Assistant Professor

Programs

CAREERS

Skills

bioinformatics genomics biology

Aidan McCrillis

University of Rhode Island

Programs

CAREERS

Skills

bioinformatics data-science biology python

Brett Milash

University of Utah

Scientific Consultant

Programs

Skills

bioinformatics python

Daniel Morales

Florida International University

Programs

Campus Champions

Skills

Nil Mu

Arizona State University

HPC System Analyst

Programs

CCMNet

Skills

artificial-intelligence bioinformatics data-science computer-science genomics statistics htc hpc-arch-and-perf hpc-operations hpc-tools hpc-cluster-architecture

Doruk Alp MUTLU

Michigan State University

Programs

ACCESS CSSN

Skills

data-analysis image-processing visualization github optimization opencv data-science slurm vim git c++c compiling jupyterhub mathematica programming programming-best-practices python pip

Nicholas Panchy

Michigan State University

Programs

Campus Champions

Skills

biology genomics open-ondemand slurm bash modules conda python r easybuild bioinformatics

Deborah Penchoff

University of Tennessee, Knoxville

Programs

Campus Champions

Skills

ai deep-learning machine-learning neural-networks reinforcement-learning supervised-learning unsupervised-learning big-data computer-graphics data-analysis dft plotting visualization data-management data-sharing github github-pages benchmarking checkpoint cpu-bound memory parallelization performance-tuning scaling fluid-dynamics gaussian molecular-dynamics openfoam pytorch tensorflow cluster cluster-management cpu-architecture distributed-computing gpu hardware hpc-cluster-architecture hpc-operations lustre networking nvidia unix-environment bash environment-modules git ssh vim vm ACCESS ACCESS-account adding-users allocation-management allocation-time allocation-users anvil bridges-2 stampede2 stampede3 abstract affiliations citation community-outreach management mentorship professional-development project-management proposal-development publication-database research-facilitation research-grants training workforce-development xsede c++fortran jupyterhub mathematica matlab mpi openmp openmpi programming python r spark batch-jobs core-hours job-accounting job-submission pbs slurm biology computational-chemistry data-science quantum-mechanics data-compliance duo vpn spack version-control profile proposal-request