Becky Yeager

University of Colorado Boulder

researcher/educator, Affinity Group Leader

Projects

- Data Presentation for the Living Bridge

- Data Visualizations Using the Microsoft HoloLens

- Light Propagation in a Temporal Focusing Microscope using Matlab

- Unsupervised learning of topologically ordered phases of matter

- Parallel computing for interactions between fluids and flexible structures with application to suspended longline aquaculture farms

- Student-Developed HPC Cluster for Active Learning

- Student-led Development of Open Source Materials for Hadoop

- Machine learning for material property prediction

- Individual Based Modeling of Diamondback Terrapins

- Multiscale HPC Modeling, Tutorials and examples

- A GIS based model for wildlife conservation in Sri Lanka

- C++/17/14 Migration of Path Integral Quantum Monte Carlo Software

- The foundation of terrestrial life: Inferring a total-evidence timeline of vascular plant evolution

- Understanding Mechanical Properties of Bio-interfaces with HPC Molecular Simulations

- Developing Computational Labs for Upper Level Physical Chemistry II Course

- Using station data and downscaled reanalysis to assess the occurrence of extreme weather

- BTLE Beaconing to Track Objects

- Genetics and Big Data

- CI Learning Resource Repository

- Using Genetic Algorithms and Support Vector Machines in Forest Mapping

- Large-area Enhanced Forest Inventory modeled on 3-D Airborne Laser Scanning data

- Kerr Black Hole Gravitational Lensing

- LOBO Fleet Monitoring

- Grey matter density, heredity, and psychotic disorders with alcohol misuse: Moving toward new diagnostic conceptualization through biotypes.

- Portal Development

- UVM Art and AI Initiative

- Onboarding Interdisciplinary Scientists to a GPU Based Cluster in Vermont

- Using Agent Based Models on small world networks to understand disease transmission

- Using distributed computing to equilibrate Monte Carlo simulations

- Tracing Oceanic Pathways using High Resolution Model Output

- Research Computing "helpdesk"

- Transient cooling of composite spherical moving droplet at high temperature with phase change and non-homogeneous boundary conditions

- Genome Sequencing of the Bornean Rock Frog

- Modeling Stellar Companions in SDSS

- Detecting and Characterizing RR Lyrae and Other Variable Stars in KELT

- Physical Oncology

- Modeling Atomic-Scale Processes in Crystalline Materials

- Simulations of Stochastically Fluctuating Hyperfine Interactions

- Incorporating Hytools into the current image processing pipeline to produce better vegetation maps that will account for radiometric signals and will parallelize workflow

- Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.

- Analyzing Pathogenic Clinical Isolates Genomes to Identify Horizontal Gene Transfer of Antibiotic-Resistance Genes

- Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation

- Deep learning for biomedical image analysis

- Solvation Shell and Ion Pair Species Geometries and Energetics of Magnesium and Zinc Ions

- Optimization of Mouse Social Behavior Data Analyses Pipeline

- Deep Learning High-Resolution Land Cover Mapping for Vermont

- Properties of Atomic Clusters

- Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field

- Parallel analysis of variants in multiple bear genomes: algorithmic solutions

- Hybrid systems and LIFE methods for Mycobacterium tuberculosis

- Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year.

- Electrostatics of the GABA(A) receptor pore

- Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters

- Benchmarking Locally-Developed HPC Resources

- An optimized search algorithm for gravitational waves from post-merger remnants

- Project WiCCED ML

- Utility poles Geo-Localization and Risk Estimation using Deep Learning

- Big Data Portal For Sharing Real-world Bioinformatics Data Sets to the Public Domain

- Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning

- Uncertainty Quantification for Urban Air Quality Modeling in Clermont-Ferrand, France

- Computational Simulation of One-Dimensional Porous Polymers

- USD CI Improvements to Advanced Chemistry and Neuroscience Research

- Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope.

- UVM Art + AI Research Group Phase 2 (2021)

- High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence

- AMD GPU-accelerated design tools for creating novel lifeforms

- Action of Hecke operators on spaces of modular forms

- Metagenomic analysis to identify gene clusters associated with IgA production

- Mo: SEMO - Research Computing Program Development

- OK: SWOSU - Enhancing Course Curriculum using HPC

- OK: UCO - Research Cyberinfrastructure Growth

- Simulating 21st century boreal forests and fire with a state-of-the-art process-based model

- US Tax Code to Natural Language Parsable Data for Programming Languages

- Statistical Analysis of criminal cases in the United States District Court of Puerto Rico

- Simulate and design “xenobots”, on the AMD platform

- GPN Women in HPC Chapter

- Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida)

- Using Long Short Term Memory to Obtain Particle Attributes during the Encapsulation Process of High Temperature Phase Change Materials

- Bearing Condition Monitoring using Machine Learning

- Flexible Material Handling using a Vision-Guided Industrial Robot

- Developing Portable and Reusable Computational Biology Modules

- Calculation of Polymer Hydrophobicity

- Understanding Covid-19 Pandemic through Social Media Discussion

- Investigating the Association between Environmental Characteristics and Psychological Well-Being

- Optimization and Parallelization of A Numerical Gravitational-Wave Model

- Learning dynamical systems with GPU-enabled scientific machine learning

- Delaware Microbiome Mapping and Database Development

- High throughput Python pipeline to identify Horizontal Gene Transfer

- Developing subject-specific models for the study of traumatic brain injury

- Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism.

- Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease.

- Predictive Simulation of Pulsed Electric Field Exposure Effects on Vegetable Tissues and Bacterial Suspensions

- Vector Representation with a Finance Corpus

- Developing deep learning algorithms to analyze Raman spectral data for brain cancer diagnosis

- Medical Diagnostics of Chest X-Ray Images with Deep Convolutional Neural Networks (CNN)

- Performance Benchmarks and Optimizations of a Gravitational-Wave Simulation Software

- Detecting Covid-19 Misinformation on Social Media

- Expanding computational resources for gravitational wave detection pipelines in medium-latency and beyond

- Bias and Fairness in Machine Learning: Identifying Bias

- Natural Language Processing of a Low Resource Language (Igbo, an African Language)

- Develop a data portal for the organization of molecular and imaging data

- Transformer-Models for Translating Tax Code

- Searching for Signals of Cosmic Anisotropy

- Digital Infrastructure for "The North Woods Project"

- Remote sensing data management for large-area forest mapping projects

- Gravitational-wave Inference with Waveform Uncertainty

- Bias and Fairness in Machine Learning: Mitigating Bias with unstructured data

- Novel Transformer based methods for Automatic Classification and Quantification of Stromule Dynamics from Microscopy Images

- Mapping mass and radius of compact objects to neutron star equation of state or boson star scalar potential

- A Longitude Study of Global Warming Discussion on Social Media

- Steered Molecular Dynamics Simulations on Human beta Defensin Crossing Model Bacterial Lipid Membranes

- Developing machine learning interatomic potentials for classical molecular dynamics simulations of complex perovskites

- Effects of wind-wave misalignment on air-sea momentum flux and drag coefficient

- Quantum mechanical simulation of fluorine-containing biomolecules

- Numerical simulation of earthquake cycles on oceanic transform faults

- Waveform Systematics for Black Hole Binary Mergers Models

- Does HPC Offer Advantages in Metabolic Network Modeling, Simulation and Optimization?

- Computational pipelines for the analysis of plastic-degrading genes

- Biogeochemical cycling consequences due to the impacts on the cellular response to warming oceans

- Improving earthquake detection and localization with deep learning

- An Evaluation of Methods for Handling Missing Data in Randomized Controlled Trials with Omitted Moderation Effects

- Development of personalized healthy food incentives to improve diet and cardiovascular risk

- Ultrafast Spectral Energy Distribution Modeling of Galaxies using GPUs

- Improving habitat suitability models to understand how mesophotic coral reef distribution will respond to climate change

- Statistical Analysis of criminal cases in the United States District Court of Puerto Rico

- Training Program to Study the Computation of Molecular Reaction Mechanisms using Gaussian on High Performance Computing (HPC) Systems

- Discovering the Structure, Function, and Evolution of Sirtuins and Associated Proteins in Aiptasia: A Deep Learning and Integrative Genomics Approach

- Mental Health and TikTok

- Framework for Reduction of Ambiguity in Text Data from Generative AI

- Training Program to Study Text Data Analytics on HPC Systems

- Gender GAP in bankruptcy filings

- Comparative Analysis of Foreign Direct Investments and Remittances to Five English-Speaking West African Countries Using Statistical, Machine Learning and Deep learning Models

- Consumer reaction to inflation news: simulation analysis of stress in response to the news language

- Waveform Systematics for Black Hole Binary Mergers Models (extension)

- Characterization of 3D organelle motion using curve fitting and clustering by unsupervised machine learning

- Neural network surrogate models of gravitational waveforms

- Data Presentation for the Living Bridge

- Data Visualizations Using the Microsoft HoloLens

- Light Propagation in a Temporal Focusing Microscope using Matlab

- Unsupervised learning of topologically ordered phases of matter

- Parallel computing for interactions between fluids and flexible structures with application to suspended longline aquaculture farms

- Student-Developed HPC Cluster for Active Learning

- Student-led Development of Open Source Materials for Hadoop

- Machine learning for material property prediction

- Individual Based Modeling of Diamondback Terrapins

- Multiscale HPC Modeling, Tutorials and examples

- A GIS based model for wildlife conservation in Sri Lanka

- C++/17/14 Migration of Path Integral Quantum Monte Carlo Software

- The foundation of terrestrial life: Inferring a total-evidence timeline of vascular plant evolution

- Understanding Mechanical Properties of Bio-interfaces with HPC Molecular Simulations

- Developing Computational Labs for Upper Level Physical Chemistry II Course

- Using station data and downscaled reanalysis to assess the occurrence of extreme weather

- BTLE Beaconing to Track Objects

- Genetics and Big Data

- CI Learning Resource Repository

- Using Genetic Algorithms and Support Vector Machines in Forest Mapping

- Large-area Enhanced Forest Inventory modeled on 3-D Airborne Laser Scanning data

- Kerr Black Hole Gravitational Lensing

- LOBO Fleet Monitoring

- Grey matter density, heredity, and psychotic disorders with alcohol misuse: Moving toward new diagnostic conceptualization through biotypes.

- Portal Development

- UVM Art and AI Initiative

- Onboarding Interdisciplinary Scientists to a GPU Based Cluster in Vermont

- Using Agent Based Models on small world networks to understand disease transmission

- Using distributed computing to equilibrate Monte Carlo simulations

- Tracing Oceanic Pathways using High Resolution Model Output

- Research Computing "helpdesk"

- Transient cooling of composite spherical moving droplet at high temperature with phase change and non-homogeneous boundary conditions

- Genome Sequencing of the Bornean Rock Frog

- Modeling Stellar Companions in SDSS

- Detecting and Characterizing RR Lyrae and Other Variable Stars in KELT

- Physical Oncology

- Modeling Atomic-Scale Processes in Crystalline Materials

- Simulations of Stochastically Fluctuating Hyperfine Interactions

- Incorporating Hytools into the current image processing pipeline to produce better vegetation maps that will account for radiometric signals and will parallelize workflow

- Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.

- Analyzing Pathogenic Clinical Isolates Genomes to Identify Horizontal Gene Transfer of Antibiotic-Resistance Genes

- Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation

- Deep learning for biomedical image analysis

- Solvation Shell and Ion Pair Species Geometries and Energetics of Magnesium and Zinc Ions

- Optimization of Mouse Social Behavior Data Analyses Pipeline

- Deep Learning High-Resolution Land Cover Mapping for Vermont

- Properties of Atomic Clusters

- Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field

- Parallel analysis of variants in multiple bear genomes: algorithmic solutions

- Hybrid systems and LIFE methods for Mycobacterium tuberculosis

- Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year.

- Electrostatics of the GABA(A) receptor pore

- Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters

- Benchmarking Locally-Developed HPC Resources

- An optimized search algorithm for gravitational waves from post-merger remnants

- Project WiCCED ML

- Utility poles Geo-Localization and Risk Estimation using Deep Learning

- Big Data Portal For Sharing Real-world Bioinformatics Data Sets to the Public Domain

- Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning

- Uncertainty Quantification for Urban Air Quality Modeling in Clermont-Ferrand, France

- Computational Simulation of One-Dimensional Porous Polymers

- USD CI Improvements to Advanced Chemistry and Neuroscience Research

- Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope.

- UVM Art + AI Research Group Phase 2 (2021)

- High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence

- AMD GPU-accelerated design tools for creating novel lifeforms

- Action of Hecke operators on spaces of modular forms

- Metagenomic analysis to identify gene clusters associated with IgA production

- Mo: SEMO - Research Computing Program Development

- OK: SWOSU - Enhancing Course Curriculum using HPC

- OK: UCO - Research Cyberinfrastructure Growth

- Simulating 21st century boreal forests and fire with a state-of-the-art process-based model

- US Tax Code to Natural Language Parsable Data for Programming Languages

- Statistical Analysis of criminal cases in the United States District Court of Puerto Rico

- Simulate and design “xenobots”, on the AMD platform

- GPN Women in HPC Chapter

- Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida)

- Using Long Short Term Memory to Obtain Particle Attributes during the Encapsulation Process of High Temperature Phase Change Materials

- Bearing Condition Monitoring using Machine Learning

- Flexible Material Handling using a Vision-Guided Industrial Robot

- Developing Portable and Reusable Computational Biology Modules

- Calculation of Polymer Hydrophobicity

- Understanding Covid-19 Pandemic through Social Media Discussion

- Investigating the Association between Environmental Characteristics and Psychological Well-Being

- Optimization and Parallelization of A Numerical Gravitational-Wave Model

- Learning dynamical systems with GPU-enabled scientific machine learning

- Delaware Microbiome Mapping and Database Development

- High throughput Python pipeline to identify Horizontal Gene Transfer

- Developing subject-specific models for the study of traumatic brain injury

- Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism.

- Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease.

- Predictive Simulation of Pulsed Electric Field Exposure Effects on Vegetable Tissues and Bacterial Suspensions

- Vector Representation with a Finance Corpus

- Developing deep learning algorithms to analyze Raman spectral data for brain cancer diagnosis

- Medical Diagnostics of Chest X-Ray Images with Deep Convolutional Neural Networks (CNN)

- Performance Benchmarks and Optimizations of a Gravitational-Wave Simulation Software

- Detecting Covid-19 Misinformation on Social Media

- Expanding computational resources for gravitational wave detection pipelines in medium-latency and beyond

- Bias and Fairness in Machine Learning: Identifying Bias

- Natural Language Processing of a Low Resource Language (Igbo, an African Language)

- Develop a data portal for the organization of molecular and imaging data

- Transformer-Models for Translating Tax Code

- Searching for Signals of Cosmic Anisotropy

- Digital Infrastructure for "The North Woods Project"

- Remote sensing data management for large-area forest mapping projects

- Gravitational-wave Inference with Waveform Uncertainty

- Bias and Fairness in Machine Learning: Mitigating Bias with unstructured data

- Novel Transformer based methods for Automatic Classification and Quantification of Stromule Dynamics from Microscopy Images

- Mapping mass and radius of compact objects to neutron star equation of state or boson star scalar potential

- A Longitude Study of Global Warming Discussion on Social Media

- Steered Molecular Dynamics Simulations on Human beta Defensin Crossing Model Bacterial Lipid Membranes

- Developing machine learning interatomic potentials for classical molecular dynamics simulations of complex perovskites

- Effects of wind-wave misalignment on air-sea momentum flux and drag coefficient

- Quantum mechanical simulation of fluorine-containing biomolecules

- Numerical simulation of earthquake cycles on oceanic transform faults

- Waveform Systematics for Black Hole Binary Mergers Models

- Does HPC Offer Advantages in Metabolic Network Modeling, Simulation and Optimization?

- Computational pipelines for the analysis of plastic-degrading genes

- Biogeochemical cycling consequences due to the impacts on the cellular response to warming oceans

- Improving earthquake detection and localization with deep learning

- An Evaluation of Methods for Handling Missing Data in Randomized Controlled Trials with Omitted Moderation Effects

- Development of personalized healthy food incentives to improve diet and cardiovascular risk

- Ultrafast Spectral Energy Distribution Modeling of Galaxies using GPUs

- Improving habitat suitability models to understand how mesophotic coral reef distribution will respond to climate change

- Statistical Analysis of criminal cases in the United States District Court of Puerto Rico

- Training Program to Study the Computation of Molecular Reaction Mechanisms using Gaussian on High Performance Computing (HPC) Systems

- Discovering the Structure, Function, and Evolution of Sirtuins and Associated Proteins in Aiptasia: A Deep Learning and Integrative Genomics Approach

- Mental Health and TikTok

- Framework for Reduction of Ambiguity in Text Data from Generative AI

- Training Program to Study Text Data Analytics on HPC Systems

- Gender GAP in bankruptcy filings

- Comparative Analysis of Foreign Direct Investments and Remittances to Five English-Speaking West African Countries Using Statistical, Machine Learning and Deep learning Models

- Consumer reaction to inflation news: simulation analysis of stress in response to the news language

- Waveform Systematics for Black Hole Binary Mergers Models (extension)

- Characterization of 3D organelle motion using curve fitting and clustering by unsupervised machine learning

- Neural network surrogate models of gravitational waveforms

Affinity Groups

RMACC/Campus Champions Region 8